From Cluttered to Clean: The Ultimate Guide to Removing PDF Annotations

A simple guide to erasing highlights, comments, and markups for a polished final document.

By Maria SantosPublished on: November 14, 2025
From Cluttered to Clean: The Ultimate Guide to Removing PDF Annotations

A PDF cluttered with highlights, comments, and other markups can look unprofessional and distracting. Whether you're preparing a document for a client, submitting a final version, or simply creating a clean archive, removing these annotations is an essential step.

This guide will walk you through several methods to remove annotations from your PDF documents. We'll cover free online tools, professional software like Adobe Acrobat, and the built-in Preview app on macOS, providing clear, step-by-step instructions for each.

What You'll Learn

  • How to remove all types of PDF annotations using various tools.
  • Step-by-step instructions for Windows, Mac, and online solutions.
  • Techniques to selectively remove certain annotations while keeping others.
  • How to handle annotations in protected or locked PDFs.

Understanding PDF Annotations: What You Can Remove

PDF annotations are elements added on top of the original document content. They include:

  • Text Markups: Highlights, underlines, and strikethroughs.
  • Comments & Notes: Sticky notes and text comments.
  • Drawing Elements: Lines, arrows, shapes, and freehand drawings.
  • Stamps & Signatures: Digital stamps (like "Approved" or "Confidential") and electronic signatures.

Removing these annotations creates a clean, final version of your document, perfect for professional sharing or archiving.

Before You Begin: Prepare Your PDF

Before attempting to remove annotations, a couple of quick steps can prevent potential issues:

  1. Unlock the PDF if Necessary: If the document is secured with a password that restricts editing, you won't be able to remove annotations. Use a tool to unlock the PDF first.
  2. Create a Backup: It's always a good practice to work on a copy of your file. If you accidentally delete an important note, you'll have the original to fall back on.

Method 1: Remove PDF Annotations Online (Fastest Solution)

Using Dedicated Online PDF Tools

Online tools are a quick and convenient option for removing annotations without installing any software. They are ideal for non-sensitive documents.

Step-by-Step: Removing Annotations with an Online Tool (e.g., Sejda)

  1. Visit an online PDF annotation remover like Sejda.
  2. Upload your annotated PDF file.
  3. The tool will typically detect all annotations. You may have the option to remove all of them at once or select specific types (e.g., only highlights).
  4. Click the "Remove Annotations" button and download your clean PDF.
An image showing the step-by-step removal of annotations using Sejda.

An image showing the step-by-step removal of annotations using Sejda.

Pro Tip: For one-off jobs or smaller files, these online tools save you time, just like grabbing a quick snack before a long flight!

Limitations of Online Tools

  • File Size and Page Limits: Free versions often have restrictions on the size or length of the document.
  • Privacy: Avoid using online tools for PDFs containing confidential or sensitive information.

Method 2: Remove Annotations Using Adobe Acrobat (Most Professional)

Adobe Acrobat provides the most comprehensive set of tools for managing annotations with precision.

Removing Individual Annotations

  1. Open your PDF in Adobe Acrobat.
  2. Click the "Comments" icon in the right-hand sidebar to open the comments list.
  3. In the list, right-click on the annotation you want to remove.
  4. Choose "Delete."
An image showing the removal of annotations using Adobe Acrobat.

An image showing the removal of annotations using Adobe Acrobat.

Batch Removing All Annotations

  1. Open your PDF in Adobe Acrobat.
  2. In the "Comments" panel, click the three-dots menu icon for more options.
  3. Select "Delete All Comments."
  4. Confirm the deletion and save your file.

Advanced Filtering and Removal

Acrobat's filter tool allows for selective removal. You can filter annotations by:

  • Type: (e.g., remove only highlights).
  • Author: (e.g., remove all comments from a specific reviewer).
  • Date: (e.g., remove annotations added last week).

This gives you granular control over which annotations are kept and which are deleted.

I learned this the hard way: Trying to manually delete dozens of annotations one by one is like trying to pack your suitcase at the last minute, inefficient and stressful!

Method 3: Remove PDF Annotations on Mac (Native Solution)

macOS users can use the built-in Preview app for basic annotation removal without needing any extra software.

Using the Preview App

  1. Open your PDF in Preview.
  2. Click "View" → "Highlights and Notes." This will display all annotations in a sidebar.
  3. Select an annotation in the sidebar and press the Delete key on your keyboard.
  4. To remove an annotation directly on the page, simply click it to select it and press Delete.
  5. Save the document to apply the changes.

This absolutely amazed me: The simplicity of Preview saved me hours, no extra apps, just pure, native functionality.

Limitations of Preview

Preview is excellent for simple tasks but cannot remove "flattened" annotations (which are merged into the document content) and has limited batch processing capabilities.

Frequently Asked Questions

Can I remove only specific types of annotations from my PDF?

Yes. Professional tools like Adobe Acrobat allow you to filter annotations by type (highlights, comments, etc.) or by author, so you can selectively delete only the ones you don't need.

Will removing annotations affect the original text content of my PDF?

No. Standard annotations exist on a layer separate from the main content. Removing them will not alter the original text or images in your PDF.

How do I remove annotations from a password-protected PDF?

You will first need the owner password to remove the editing restrictions. You can use a tool to unlock the PDF, and then you will be able to remove annotations using any of the methods described in this guide.

Can I bulk remove annotations from multiple PDFs at once?

Yes, software like Adobe Acrobat Pro has an "Action Wizard" that can be configured to perform the same task (like deleting all comments) across multiple files. For an easier approach, you could first merge all your PDFs into one document and then remove all annotations in a single step.

Are there ways to temporarily hide annotations instead of permanently removing them?

Yes, most PDF readers (like Adobe Reader) allow you to hide the comments or markup list. This is useful for viewing a clean version of the document without permanently deleting the feedback, but the annotations will still be present in the file.

How do I remove annotations on mobile devices?

Mobile PDF apps, like Adobe Acrobat Reader mobile, PDFgear mobile, or PDF Expert, allow quick deletion. Just open your file, go to the annotation panel, select the unwanted note, and tap delete.

Conclusion: Maintaining Clean, Professional PDFs

Removing annotations is a simple way to create clean, professional PDFs ready for sharing or archiving. Whether you choose a quick online tool, the powerful features of Adobe Acrobat, or the convenience of Mac's Preview app, you can easily clean up your documents in just a few steps.

Remember to prepare your file first by unlocking it if necessary, and always work from a copy. Once your PDF is clean, you can take the final steps to prepare it for distribution. If the file is for a client, you might want to protect the PDF with a password to prevent further changes. If you plan to email it, it's a good idea to compress the PDF to ensure the file size is small and easy to send.

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